INCFinder

GenBank ID	AP043779.1
Plasmid name	pJCM14758
Classification	C1
Length	156 911 bp
GC content	50%
Organism	Shewanella algae JCM 14758
Curation	Manually annotated

Plasmid map

Notes

RHS1 is missing, the empty sites of I1 and I2 insertion are intact.

Characteristic genes

Gene name	Length	Location	Length of alignment	Identity (%)	Coverage (%)	E-value
repA	1101	69910 - 71010 (+)	1101	98	100	0
ORF1832	5500	122547 - 128045 (+)	5500	92	100	0
R55_oriV	857	71134 - 71984 (+)	857	84	100	0
RA1_oriV	859	71133 - 71981 (+)	859	80	100	0

Antimicrobial resistance genes

Type match	Model name	Model type	Location	E-value	Identity
Strict	adeF	protein homolog model	22239 - 25412(+)	0	61.58 %
resistance-nodulation-cell division (RND) antibiotic efflux pump AMR Gene Family Directed pumping of antibiotic out of a cell to confer resistance. Resistance-nodulation-division (RND) proteins are found in both prokaryotic and eukaryotic cells and have diverse substrate specificities and physiological roles. However, there are relatively few RND transporters and they are secondary transporters, energized not by ATP binding/hydrolysis but by proton movement down the transmembrane electrochemical gradient. tetracycline Antibiotic Tetracycline is a broad-spectrum polyketide antibiotic produced by many Streptomyces. It works by inhibiting action of the prokaryotic 30S ribosome. fluoroquinolone antibiotic Drug Class The fluoroquinolones are a family of synthetic broad-spectrum antibiotics that are 4-quinolone-3-carboxylates. These compounds interact with topoisomerase II (DNA gyrase) to disrupt bacterial DNA replication, damage DNA, and cause cell death. tetracycline antibiotic Drug Class These antibiotics are derived from tetracycline, a polyketide antibiotic that inhibits the 30S subunit of bacterial ribosomes. efflux pump complex or subunit conferring antibiotic resistance Efflux Component Efflux proteins that pump antibiotic out of a cell to confer resistance. antibiotic efflux Resistance Mechanism Antibiotic resistance via the transport of antibiotics out of the cell.